PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08190.3
Common NameLR48_Vigan02g196700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 121aa    MW: 13275.9 Da    PI: 5.0368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08190.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.7e-16244349
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                    y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  
  Vang06g08190.3  2 YLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAIAYDLS 44
                    67******.**********865...5******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.323158IPR001471AP2/ERF domain
SMARTSM003804.0E-26164IPR001471AP2/ERF domain
CDDcd000183.77E-26257No hitNo description
Gene3DG3DSA:3.30.730.105.3E-26258IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-20259IPR016177DNA-binding domain
PRINTSPR003674.3E-9213IPR001471AP2/ERF domain
PfamPF008471.9E-9443IPR001471AP2/ERF domain
PRINTSPR003674.3E-92440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MYLGVRRRPW GRYAAEIRNP YTKERHWLGT FDTAEEAAIA YDLSSINISG INARTNFHYP  60
FLSLPPPPIS LPPPPPPPTP ELHQSVGVCP EMNSAFDGDD ESLVIASILQ SFSNSGNCSF  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-15257359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-15257662ATERF1
3gcc_A2e-15257662ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511911.11e-84PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A0S3SNK53e-85A0A0S3SNK5_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TZH23e-85A0A0L9TZH2_PHAAN; Uncharacterized protein
STRINGGLYMA20G31293.12e-60(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-30ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]